## 
##   The 'cran_repo' argument in shelf() was not set, so it will use
##   cran_repo = 'https://cran.r-project.org' by default.
## 
##   To avoid this message, set the 'cran_repo' argument to a CRAN
##   mirror URL (see https://cran.r-project.org/mirrors.html) or set
##   'quiet = TRUE'.
## [1] 2446

## [1] 2432
## 
## Call:
## lm(formula = present ~ ., data = d)
## 
## Residuals:
##     Min      1Q  Median      3Q     Max 
## -1.1107 -0.3572  0.1087  0.3528  1.1086 
## 
## Coefficients:
##               Estimate Std. Error t value Pr(>|t|)    
## (Intercept)  7.360e-01  5.813e-01   1.266    0.206    
## WC_alt      -3.637e-04  7.511e-05  -4.842 1.36e-06 ***
## WC_bio1     -1.011e-01  1.266e-02  -7.986 2.13e-15 ***
## WC_bio2      1.115e-02  6.241e-03   1.787    0.074 .  
## ER_tri      -3.407e-03  7.830e-04  -4.351 1.41e-05 ***
## ER_topoWet   2.246e-02  1.320e-02   1.701    0.089 .  
## lon          6.150e-02  6.330e-03   9.715  < 2e-16 ***
## lat          2.691e-02  4.151e-03   6.484 1.08e-10 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Residual standard error: 0.4336 on 2424 degrees of freedom
## Multiple R-squared:  0.2503, Adjusted R-squared:  0.2481 
## F-statistic: 115.6 on 7 and 2424 DF,  p-value: < 2.2e-16
## [1] -0.4659931  1.1107122
## [1] 0 1
## 
## Call:
## glm(formula = present ~ ., family = binomial(link = "logit"), 
##     data = d)
## 
## Deviance Residuals: 
##     Min       1Q   Median       3Q      Max  
## -2.5996  -0.8398  -0.1561   0.9014   2.6900  
## 
## Coefficients:
##               Estimate Std. Error z value Pr(>|z|)    
## (Intercept)  4.4318340  3.4020112   1.303    0.193    
## WC_alt      -0.0024665  0.0004621  -5.337 9.43e-08 ***
## WC_bio1     -0.6511722  0.0820807  -7.933 2.13e-15 ***
## WC_bio2      0.0521497  0.0341972   1.525    0.127    
## ER_tri      -0.0171178  0.0042905  -3.990 6.62e-05 ***
## ER_topoWet   0.1641443  0.0716416   2.291    0.022 *  
## lon          0.3074867  0.0359838   8.545  < 2e-16 ***
## lat          0.1370821  0.0228909   5.988 2.12e-09 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## (Dispersion parameter for binomial family taken to be 1)
## 
##     Null deviance: 3371.4  on 2431  degrees of freedom
## Residual deviance: 2675.3  on 2424  degrees of freedom
## AIC: 2691.3
## 
## Number of Fisher Scoring iterations: 4
## [1] 0.002972786 0.965914381

## 
##   The 'cran_repo' argument in shelf() was not set, so it will use
##   cran_repo = 'https://cran.r-project.org' by default.
## 
##   To avoid this message, set the 'cran_repo' argument to a CRAN
##   mirror URL (see https://cran.r-project.org/mirrors.html) or set
##   'quiet = TRUE'.
## 
## Family: binomial 
## Link function: logit 
## 
## Formula:
## present ~ s(WC_alt) + s(WC_bio1) + s(WC_bio2) + s(ER_tri) + s(ER_topoWet) + 
##     s(lon) + s(lat)
## 
## Parametric coefficients:
##             Estimate Std. Error z value Pr(>|z|)    
## (Intercept)  -1.8530     0.1963  -9.441   <2e-16 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Approximate significance of smooth terms:
##                 edf Ref.df  Chi.sq p-value    
## s(WC_alt)     8.993  8.998  70.601  <2e-16 ***
## s(WC_bio1)    6.861  7.770  44.363  <2e-16 ***
## s(WC_bio2)    8.805  8.982  50.498  <2e-16 ***
## s(ER_tri)     5.508  6.712  13.243  0.0573 .  
## s(ER_topoWet) 6.483  7.583   9.871  0.1698    
## s(lon)        8.759  8.978 123.994  <2e-16 ***
## s(lat)        8.765  8.983 240.231  <2e-16 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## R-sq.(adj) =  0.658   Deviance explained = 60.2%
## UBRE = -0.40238  Scale est. = 1         n = 2432

## 
##   The 'cran_repo' argument in shelf() was not set, so it will use
##   cran_repo = 'https://cran.r-project.org' by default.
## 
##   To avoid this message, set the 'cran_repo' argument to a CRAN
##   mirror URL (see https://cran.r-project.org/mirrors.html) or set
##   'quiet = TRUE'.
## Loading required namespace: rJava
## This is MaxEnt version 3.4.3